Planteome: Term Details for "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" (GO:0000288)

You are using the Cyverse mirror of the Planteome Ontology Browser. The main site is currently down for maintenance.

Notice

Some functionality on this page depends on JavaScript. To fully use the features of AmiGO 2, enable JavaScript in your browser and reload from the landing page.

Term Information

Accession: GO:0000288
Name: nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Ontology: biological_process
Synonyms: deadenylation-dependent mRNA decay, mRNA breakdown, deadenylation-dependent decay, mRNA catabolic process, deadenylation-dependent, mRNA catabolic process, deadenylylation-dependent, mRNA catabolism, deadenylation-dependent, mRNA catabolism, deadenylylation-dependent, mRNA degradation, deadenylation-dependent decay, nuclear mRNA catabolic process, deadenylation-dependent decay
Alternate IDs: None
Definition: A major pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of ordered steps that includes poly(A) tail shortening and that can regulate mRNA stability. Source: GOC:krc, GOC:jp
Comment: None
History: See term history for GO:0000288 at QuickGO
Subset: None
Related: Link to all annotated objects annotated to nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay.; Link to all direct and indirect annotations to nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay.; Link to all direct and indirect annotations download (limited to first 10,000) for nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay.
Feedback: Contact the Planteome feedback if you find mistakes or have concerns about the data you find here.
Comments, changes to terms, or requests for new ontology terms can be made at GO issue tracker on GitHub.

Filter results

Viewing options

BFO:0000001 entity
BFO:0000003 occurrent
BFO:0000015 process
GO:0008150 biological_process
GO:0009987 cellular process
GO:0008152 metabolic process
GO:0065007 biological regulation
GO:0044237 cellular metabolic process
GO:0006807 nitrogen compound metabolic process
GO:0071704 organic substance metabolic process
GO:0009058 biosynthetic process
GO:0009056 catabolic process
GO:0006725 cellular aromatic compound metabolic process
GO:0034641 cellular nitrogen compound metabolic process
GO:0046483 heterocycle metabolic process
GO:1901360 organic cyclic compound metabolic process
GO:0044238 primary metabolic process
GO:0050789 regulation of biological process
GO:0044249 cellular biosynthetic process
GO:0044248 cellular catabolic process
GO:0043170 macromolecule metabolic process
GO:0048519 negative regulation of biological process
GO:0006139 nucleobase-containing compound metabolic process
GO:1901575 organic substance catabolic process
GO:0048518 positive regulation of biological process
GO:0050794 regulation of cellular process
GO:0019222 regulation of metabolic process
GO:0043603 amide metabolic process
GO:0019439 aromatic compound catabolic process
GO:0044271 cellular nitrogen compound biosynthetic process
GO:0044270 cellular nitrogen compound catabolic process
GO:0010467 gene expression
GO:0046700 heterocycle catabolic process
GO:0009892 negative regulation of metabolic process
GO:0090304 nucleic acid metabolic process
GO:1901361 organic cyclic compound catabolic process
GO:1901576 organic substance biosynthetic process
GO:1901564 organonitrogen compound metabolic process
GO:0048522 positive regulation of cellular process
GO:0009893 positive regulation of metabolic process
GO:0031323 regulation of cellular metabolic process
GO:0060255 regulation of macromolecule metabolic process
GO:0051171 regulation of nitrogen compound metabolic process
GO:0080090 regulation of primary metabolic process
GO:0043604 amide biosynthetic process
GO:0009057 macromolecule catabolic process
GO:0010605 negative regulation of macromolecule metabolic process
GO:0034655 nucleobase-containing compound catabolic process
GO:1901566 organonitrogen compound biosynthetic process
GO:0006518 peptide metabolic process
GO:0031325 positive regulation of cellular metabolic process
GO:0051173 positive regulation of nitrogen compound metabolic process
GO:0010468 regulation of gene expression
GO:0019219 regulation of nucleobase-containing compound metabolic process
GO:0016070 RNA metabolic process
GO:0009059 macromolecule biosynthetic process
GO:0016071 mRNA metabolic process
GO:0048523 negative regulation of cellular process
GO:0010629 negative regulation of gene expression
GO:0043043 peptide biosynthetic process
GO:0010604 positive regulation of macromolecule metabolic process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process
GO:0019538 protein metabolic process
GO:0009889 regulation of biosynthetic process
GO:0009894 regulation of catabolic process
GO:0051252 regulation of RNA metabolic process
GO:0006401 RNA catabolic process
GO:0006402 mRNA catabolic process
GO:0009890 negative regulation of biosynthetic process
GO:0031324 negative regulation of cellular metabolic process
GO:0051172 negative regulation of nitrogen compound metabolic process
GO:0009896 positive regulation of catabolic process
GO:0051254 positive regulation of RNA metabolic process
GO:0010608 post-transcriptional regulation of gene expression
GO:0034248 regulation of amide metabolic process
GO:0065008 regulation of biological quality
GO:0031326 regulation of cellular biosynthetic process
GO:0031329 regulation of cellular catabolic process
GO:0010556 regulation of macromolecule biosynthetic process
GO:1903311 regulation of mRNA metabolic process
GO:0051246 regulation of protein metabolic process
GO:0006412 translation
GO:0034249 negative regulation of amide metabolic process
GO:0031327 negative regulation of cellular biosynthetic process
GO:0010558 negative regulation of macromolecule biosynthetic process
GO:0051248 negative regulation of protein metabolic process
GO:0031331 positive regulation of cellular catabolic process
GO:1903313 positive regulation of mRNA metabolic process
GO:0061013 regulation of mRNA catabolic process
GO:0043487 regulation of RNA stability
GO:0006417 regulation of translation
GO:0017148 negative regulation of translation
GO:0061014 positive regulation of mRNA catabolic process
GO:0043488 regulation of mRNA stability
GO:0050779 RNA destabilization
GO:0061157 mRNA destabilization
GO:0000956 nuclear-transcribed mRNA catabolic process
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0043928 exonucleolytic catabolism of deadenylated mRNA
GO:1900152 negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

Parents of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (GO:0000288)

subject	relation	object
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	is_a	mRNA destabilization (GO:0061157)
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	is_a	nuclear-transcribed mRNA catabolic process (GO:0000956)

Children of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (GO:0000288)

subject	relation	object
exonucleolytic catabolism of deadenylated mRNA (GO:0043928)	BFO:0000050	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (GO:1900151)	RO:0002211	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (GO:1900152)	RO:0002212	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
nuclear-transcribed mRNA poly(A) tail shortening (GO:0000289)	BFO:0000050	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (GO:1900153)	RO:0002213	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
deadenylation-dependent decapping of nuclear-transcribed mRNA (GO:0000290)	BFO:0000050	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

Term Information

Filter results

Viewing options

Parents of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (GO:0000288)

Children of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (GO:0000288)

None.